Articles à comité de lecture

2020 (liste provisoire)

Frédéric Rimet, Orlane Anneville, Denis Barbet, Cécile Chardon, Laura Crepin, et al.. The Observatory on LAkes (OLA) database: Sixty years of environmental data accessible to the public. Journal of Limnology, 2020, 79 (2), pp.164-178. ff10.4081/jlimnol.2020.1944ff. ffhal-02916312 

Blanluet, A., Goulon, C., Lebourges-Dhaussy, A. et al. Effect of a Transducer Horizontality Default on Lake Fish Stock Assessment. Acoust Aust (2020). https://doi.org/10.1007/s40857-020-00206-1

Michaël  Girard, Chloé  Goulon, Anne  Tessier, Pascal  Vonlanthen, Jean  Guillard ;  Comparisons of day-time and night-time hydroacoustic surveys in temperate lakes Aquat. Living Resour. 33 9 (2020)

DOI: 10.1051/alr/2020011

Jonathan Derot, Hiroshi Yajima, Stéphan Jacquet,

Advances in forecasting harmful algal blooms using machine learning models: A case study with Planktothrix rubescens in Lake Geneva, Harmful Algae, Volume 99, 2020, 101906, ISSN 1568-9883,

https://doi.org/10.1016/j.hal.2020.101906.

 Marine Lemaire, Jean Guillard, Orlane Anneville, Jérémy Lobry, Major biomass fluctuations in lake food webs – An example in the peri-alpine Lake Annecy, Journal of Great Lakes Research, Volume 46, Issue 4, 2020, Pages 798-812,ISSN 0380-1330, https://doi.org/10.1016/j.jglr.2020.04.007.

Nathalie Lécrivain, Bernard Clément, Aymeric Dabrin, Juliette Seigle-Ferrand, Damien Bouffard, Emmanuel Naffrechoux, Victor Frossard, Water-level fluctuation enhances sediment and trace metal mobility in lake littoral,  Chemosphere,  Volume 264, Part 2, 2021, 128451, ISSN 0045-6535, https://doi.org/10.1016/j.chemosphere.2020.128451.

 Theo Baracchini, Stef Hummel, Martin Verlaan, Andrea Cimatoribus, Alfred Wüest, Damien Bouffard,An automated calibration framework and open source tools for 3D lake hydrodynamic models, Environmental Modelling & Software, Volume 134, 2020, 104787, ISSN 1364-8152, https://doi.org/10.1016/j.envsoft.2020.104787.

 Baracchini, T., Chu, P. Y., Šukys, J., Lieberherr, G., Wunderle, S., Wüest, A., and Bouffard, D.: Data assimilation of in situ and satellite remote sensing data to 3D hydrodynamic lake models: a case study using Delft3D-FLOW v4.03 and OpenDA v2.4, Geosci. Model Dev., 13, 1267–1284, https://doi.org/10.5194/gmd-13-1267-2020, 2020.

 2019

Articles dans des revues à comité de lecture répertoriées dans la base ISI Web of Knowledge : (ACL)

Anneville O., Chang C.W., Dur G., Souissi S., Rimet F., Hsieh C.H., 2019. The paradox of re-oligotrophication: the role of bottom-up versus top-down controls on the phytoplankton community. Oikos. 128 : 1666-1677. https://doi.org/10.1111/oik.06399

Bruel R., Girardclos S., Marchetto A., Kremer K., Crouzet C., Reyss J.-L., et al. (2019). Reframing Lake Geneva ecological trajectory in a context of multiple but asynchronous drivers. EarthArXiv. https://doi.org/10.31223/osf.io/j8up3

 Lécrivain N., Frossard V., Clément B., 2019. Changes in mobility of trace metals at the sediment-water-biota interfaces following laboratory drying and re-immersion of a lacustrine sediment. Environmental Science and Pollution Research, 26: 14050-14058

 Lécrivain N., Frossard V., Clément B., 2019. Contribution of trace metallic elements to weakly contaminated lacustrine sediments: effects on benthic and pelagic organisms through multi-species laboratory bioassays. Ecotoxicology, 28 : 154–166

 Lécrivain N., Frossard V., Naffrechoux E., Clément B., 2019. Looking at Organic Pollutants (OPs) signatures in Littoral sediments to assess the influence of a local urban source at the whole lake scale. Polycyclic Aromatic Compounds, https://doi.org/10.1080/10406638.2019.1631195

 Lepère C., Domaizon I., Humbert J-F., Jardillier L., Hugoni M., Debroas D., 2019. Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ 7:e6247 https://doi.org/10.7717/peerj.6247

 Masset T., Frossard V., Perga M.E., Cottin N., Piot C., Cachera S., Naffrechoux E., 2019. Trophic position and individual feeding habits as drivers of differential PCB bioaccumulation in fish populations. Science of the Total Environment, 674: 472-481.

 Metz S., Singer D., Domaizon I., Unrein F., Lara E., 2019. Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches. Environmental Microbiology, 21(10): 3885-3895. https://doi.org/10.1111/1462-2920.14738

 Mouget, A., Goulon, C., Axenrot, T., Balk, H., Lebourges-Dhaussy, A., Godlewska, M., Guillard, J., 2019. Including 38 kHz in the standardization protocol for hydroacoustic fish surveys in temperate lakes. Remote sensing in Ecology and Conservation, 5(4): 332–345 doi: 10.1002/rse2.112

 Nouchi, V., Kutser, T., Wüest, A. et al. Resolving biogeochemical processes in lakes using remote sensing. Aquat Sci 81, 27 (2019). https://doi.org/10.1007/s00027-019-0626-3

 Paix B., Ezzedine J.A., Jacquet S., 2019. Diversity, dynamics, and distribution of Bdellovibrio and like organisms in Perialpine Lakes. Applied and Environmental Microbiology 85 (6) e02494-18; DOI: 10.1128/AEM.02494-18

 Rimet F., Feret L., Bouchez A., Dorioz J.M., Dambrine E. (2019) Factors influencing the heterogeneity of benthic diatom communities within alpine lakes. Hydrobiologia, 839: 103-118. https://doi.org/10.1007/s10750-019-03999-z

 Soulignac F., Anneville O., Bouffard D., Chanudet V., Dambrine E., Guénand Y., Harmel T., Ibelings B., Trevisan D., Uittenbogaard R., Danis P.-A., 2019. Contribution of 3D coupled hydrodynamic-ecological modeling to assess the representativeness of a sampling protocol for lake water quality assessment. Knowledge & Management of Aquatic Ecosystems. 420, 42. https://doi.org/10.1051/kmae/2019034

 Weyhenmeyer G. et al., 2019. Widespread diminishing anthropogenic effects on calcium in freshwaters. Scientific Report 9, 10450 doi:10.1038/s41598-019-46838-w

 Articles dans des revues non répertoriées dans la base ISI Web of Knowledge

 Baulaz Y., 2019, Chroniques de la pêche au Léman, Les voix du Léman, 3 p.

 Ezzedine J.A., Jacquet S., 2019. Diversité et rôles des bactéries prédatrices de bactéries: Zoom sur les Bdellovibrio et organismes apparentés (BALOs). Notes Académiques de l'Académie d'Agriculture de France 2 : 1-25

 Frossard V., Cattanéo F., Domaizon I., Goulon C., Grimardias D., Guillard J., Lucas S., Ropars C. et Vagnon C., 2019. Le silure (Silurus glanis) dans les grands lacs alpins : un modèle d’étude émergent. Les voix du Léman / APALLF 42

 Jacquet, S., Domaizon, I., Napoleoni R., Bosson J.B., 2019. Des lacs sous surveillance. Nature & Patrimoine des Pays de Savoie, pp 8-12.

 Lohéac, B., Caudron, A., Guillard, J., 2019. Communautés piscicoles introduites des lacs d’altitude : approches scientifiques et influences idéologiques. Revue des sciences de l'eau, 32, (1), 39–50. https://doi.org/10.7202/1059879ar

2018

Anneville, O., Dur, G., Rimet, F., Souissi, S., 2018. Plasticity in phytoplankton annual periodicity: an adaptation to long-term environmental changes. Hydrobiologia 824, 121–141. https://doi.org/10.1007/s10750-017-3412-z

Bouffard, D., Kiefer, I., Wüest, A., Wunderle, S., Odermatt, D., 2018. Are surface temperature and chlorophyll in a large deep lake related? An analysis based on satellite observations in synergy with hydrodynamic modelling and in-situ data. Remote Sensing of Environment 209, 510–523. https://doi.org/10.1016/j.rse.2018.02.056

Bruce, L.C., Frassl, M.A., Arhonditsis, G.B., Gal, G., Hamilton, D.P., Hanson, P.C., Hetherington, A.L., Melack, J.M., Read, J.S., Rinke, K., Rigosi, A., Trolle, D., Winslow, L., Adrian, R., Ayala, A.I., Bocaniov, S.A., Boehrer, B., Boon, C., Brookes, J.D., Bueche, T., Busch, B.D., Copetti, D., Cortés, A., de Eyto, E., Elliott, J.A., Gallina, N., Gilboa, Y., Guyennon, N., Huang, L., Kerimoglu, O., Lenters, J.D., MacIntyre, S., Makler-Pick, V., McBride, C.G., Moreira, S., Özkundakci, D., Pilotti, M., Rueda, F.J., Rusak, J.A., Samal, N.R., Schmid, M., Shatwell, T., Snorthheim, C., Soulignac, F., Valerio, G., van der Linden, L., Vetter, M., Vinçon-Leite, B., Wang, J., Weber, M., Wickramaratne, C., Woolway, R.I., Yao, H., Hipsey, M.R., 2018. A multi-lake comparative analysis of the General Lake Model (GLM): Stress-testing across a global observatory network. Environmental Modelling & Software 102, 274–291. https://doi.org/10.1016/j.envsoft.2017.11.016

Cimatoribus, A. A., Lemmin, U., Bouffard, D., & Barry, D. A. (2018). Nonlinear dynamics of the nearshore boundary layer of a large lake (Lake Geneva). Journal of Geophysical Research: Oceans, 123, 1016– 1031. https://doi.org/10.1002/2017JC013531

Frantz, A., Perga, M.-E., Guillard, J., 2018. Parasitic versus nutritional regulation of natural fish populations. Ecology and Evolution 8, 8713–8725. https://doi.org/10.1002/ece3.4391

Frossard, V., Fontvieille, D., 2018. What is the invasiveness of Hemimysis anomala (Crustacea, Mysidae) in the large deep Lake Bourget, France? Hydrobiologia 814, 219–232. https://doi.org/10.1007/s10750-018-3538-7

Frossard, V., Marchand, P., 2018. Littoral chironomids of a large Alpine lake: spatial variation and variables supporting diversity. Knowledge & Management of Aquatic Ecosystems 45. https://doi.org/10.1051/kmae/2018034

Frossard, V., Rimet, F., Perga, M.-E., 2018. Causal networks reveal the dominance of bottom-up interactions in large, deep lakes. Ecological Modelling 368, 136–146. https://doi.org/10.1016/j.ecolmodel.2017.11.021

Leach, T.H., Beisner, B.E., Carey, C.C., Pernica, P., Rose, K.C., Huot, Y., Brentrup, J.A., Domaizon, I., Grossart, H.-P., Ibelings, B.W., Jacquet, S., Kelly, P.T., Rusak, J.A., Stockwell, J.D., Straile, D., Verburg, P., 2018. Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: The relative importance of light and thermal stratification: Patterns and drivers of DCM structure across lakes. Limnology and Oceanography 63, 628–646. https://doi.org/10.1002/lno.10656

Lécrivain, N., Aurenche, V., Cottin, N., Frossard, V., Clément, B., 2018. Multi-contamination (heavy metals, polychlorinated biphenyls and polycyclic aromatic hydrocarbons) of littoral sediments and the associated ecological risk assessment in a large lake in France (Lake Bourget). Science of The Total Environment 619–620, 854–865. https://doi.org/10.1016/j.scitotenv.2017.11.151

Monchamp, M.-E., Spaak, P., Domaizon, I., Dubois, N., Bouffard, D., Pomati, F., 2018. Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication. Nature Ecology & Evolution 2, 317–324. https://doi.org/10.1038/s41559-017-0407-0

Vincent Nouchi, Daniel Odermatt, Alfred Wüest & Damien Bouffard (2018) Effects of non-uniform vertical constituent profiles on remote sensing reflectance of oligo- to mesotrophic lakes, European Journal of Remote Sensing, 51:1, 808-821, DOI: 10.1080/22797254.2018.1493360

Parikka, K.J., Jacquet, S., Colombet, J., Guillaume, D., Le Romancer, M., 2018. Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands. Polar Biology 41, 1335–1352. https://doi.org/10.1007/s00300-018-2288-3

Pollet, T., Berdjeb, L., Chardon, C., Jacquet, S., 2018. Contrasting temporal patterns in ammonia-oxidizing archaeal community dynamics in two peri-alpine lakes with different trophic status. Aquatic Microbial Ecology 81, 95–108. https://doi.org/10.3354/ame01861

Rahaghi, A.I., Lemmin, U., Cimatoribus, A., Bouffard, D., Riffler, M., Wunderle, S., Barry, D.A., 2018. Improving surface heat flux estimation for a large lake through model optimization and two-point calibration: The case of Lake Geneva: Surface heat flux calibration. Limnology and Oceanography: Methods 16, 576–593. https://doi.org/10.1002/lom3.10267

Rimet, F., Druart, J.-C., 2018. A trait database for Phytoplankton of temperate lakes. Annales de Limnologie - International Journal of Limnology 54, 18. https://doi.org/10.1051/limn/2018009

Rivera, S.F., Vasselon, V., Jacquet, S., Bouchez, A., Ariztegui, D., Rimet, F., 2018. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia 807, 37–51. https://doi.org/10.1007/s10750-017-3381-2

Schwefel, R., Steinsberger, T., Bouffard, D., Bryant, L.D., Müller, B., Wüest, A., 2018. Using small-scale measurements to estimate hypolimnetic oxygen depletion in a deep lake: Oxygen depletion in a deep lake. Limnology and Oceanography 63, S54–S67. https://doi.org/10.1002/lno.10723

Soulignac, F., Danis, P.-A., Bouffard, D., Chanudet, V., Dambrine, E., Guénand, Y., Harmel, T., Ibelings, B.W., Trevisan, D., Uittenbogaard, R., Anneville, O., 2018. Using 3D modeling and remote sensing capabilities for a better understanding of spatio-temporal heterogeneities of phytoplankton abundance in large lakes. Journal of Great Lakes Research 44, 756–764. https://doi.org/10.1016/j.jglr.2018.05.008

Vasselon, V., Bouchez, A., Rimet, F., Jacquet, S., Trobajo, R., Corniquel, M., Tapolczai, K., Domaizon, I., 2018. Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology and Evolution 9, 1060–1069. https://doi.org/10.1111/2041-210X.12960

 2017

Capo, E., Debroas, D., Arnaud, F., Perga, M.-E., Chardon, C., Domaizon, I., 2017. Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming: Long-term dynamics of microbial eukaryotes. Environmental Microbiology 19, 2873–2892. https://doi.org/10.1111/1462-2920.13815

David, P., Thébault, E., Anneville, O., Duyck, P.-F., Chapuis, E., Loeuille, N., 2017. Impacts of Invasive Species on Food Webs, in: Advances in Ecological Research. Elsevier, pp. 1–60. https://doi.org/10.1016/bs.aecr.2016.10.001

Debroas, D., Domaizon, I., Humbert, J.-F., Jardillier, L., Lepère, C., Oudart, A., Taïb, N., 2017. Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data. FEMS Microbiology Ecology 93. https://doi.org/10.1093/femsec/fix023

Domaizon, I., Winegardner, A., Capo, E., Gauthier, J., Gregory-Eaves, I., 2017. DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity. Journal of Paleolimnology 58, 1–21. https://doi.org/10.1007/s10933-017-9958-y

Dugan, H.A., Summers, J.C., Skaff, N.K., Krivak-Tetley, F.E., Doubek, J.P., Burke, S.M., Bartlett, S.L., Arvola, L., Jarjanazi, H., Korponai, J., Kleeberg, A., Monet, G., Monteith, D., Moore, K., Rogora, M., Hanson, P.C., Weathers, K.C., 2017. Long-term chloride concentrations in North American and European freshwater lakes. Scientific Data 4, 170101. https://doi.org/10.1038/sdata.2017.101

Feret, L., Bouchez, A., Rimet, F., 2017. Benthic diatom communities in high altitude lakes: a large scale study in the French Alps. Annales de Limnologie - International Journal of Limnology 53, 411–423. https://doi.org/10.1051/limn/2017025

Fouinat, L., Sabatier, P., Poulenard, J., Etienne, D., Crouzet, C., Develle, A.-L., Doyen, E., Malet, E., Reyss, J.-L., Sagot, C., Bonet, R., Arnaud, F., 2017. One thousand seven hundred years of interaction between glacial activity and flood frequency in proglacial Lake Muzelle (western French Alps). Quaternary Research 87, 407–422.

Frossard, V., Verneaux, V., Giraudoux, P., 2017. Quantitative assessment of the reliability of chironomid remains in paleoecology: effects of count density and sample size. Journal of Paleolimnology 57, 205–212. https://doi.org/10.1007/s10933-016-9927-x

Gallina, N., Beniston, M., Jacquet, S., 2017. Estimating future cyanobacterial occurrence and importance in lakes: a case study with Planktothrix rubescens in Lake Geneva. Aquatic Sciences 79, 249–263. https://doi.org/10.1007/s00027-016-0494-z

Grimardias, D., Guillard, J., Cattanéo, F., 2017. Drawdown flushing of a hydroelectric reservoir on the Rhône River: Impacts on the fish community and implications for the sediment management. Journal of Environmental Management 197, 239–249. https://doi.org/10.1016/j.jenvman.2017.03.096

Kamenova, S., Bartley, T.J., Bohan, D.A., Boutain, J.R., Colautti, R.I., Domaizon, I., Fontaine, C., Lemainque, A., Le Viol, I., Mollot, G., Perga, M.-E., Ravigné, V., Massol, F., 2017. Invasions Toolkit, in: Advances in Ecological Research. Elsevier, pp. 85–182. https://doi.org/10.1016/bs.aecr.2016.10.009

Kerimoglu, O., Jacquet, S., Vinçon-Leite, B., Lemaire, B.J., Rimet, F., Soulignac, F., Trévisan, D., Anneville, O., 2017. Modelling the plankton groups of the deep, peri-alpine Lake Bourget. Ecological Modelling 359, 415–433. https://doi.org/10.1016/j.ecolmodel.2017.06.005

Kraemer, B.M., Chandra, S., Dell, A.I., Dix, M., Kuusisto, E., Livingstone, D.M., Schladow, S.G., Silow, E., Sitoki, L.M., Tamatamah, R., McIntyre, P.B., 2017. Global patterns in lake ecosystem responses to warming based on the temperature dependence of metabolism. Global Change Biology 23, 1881–1890. https://doi.org/10.1111/gcb.13459

Nõges, T., Anneville, O., Guillard, J., Haberman, J., Järvalt, A., Manca, M., Morabito, G., Rogora, M., Thackeray, S.J., Volta, P., Winfield, I.J., Nõges, P., 2017. Fisheries impacts on lake ecosystem structure in the context of a changing climate and trophic state. Journal of Limnology. https://doi.org/10.4081/jlimnol.2017.1640

Perga, M.-E., Nellier, Y.-M., Cottin, N., Fanget, P., Naffrechoux, E., 2017. Bioconcentration may be favoured over biomagnification for fish PCB contamination in high altitude lakes. Inland Waters 7, 14–26. https://doi.org/10.1080/20442041.2017.1294320

Pistocchi, C., Tamburini, F., Gruau, G., Ferhi, A., Trevisan, D., Dorioz, J.-M., 2017. Tracing the sources and cycling of phosphorus in river sediments using oxygen isotopes: Methodological adaptations and first results from a case study in France. Water Research 111, 346–356. https://doi.org/10.1016/j.watres.2016.12.038

Savary, R., Dufresnes, C., Champigneulle, A., Caudron, A., Dubey, S., Perrin, N., Fumagalli, L., 2017. Stocking activities for the Arctic charr in Lake Geneva: Genetic effects in space and time. Ecology and Evolution 7, 5201–5211. https://doi.org/10.1002/ece3.3073

Steinsberger, T., Schmid, M., Wüest, A., Schwefel, R., Wehrli, B., Müller, B., 2017. Organic carbon mass accumulation rate regulates the flux of reduced substances from the sediments of deep lakes. Biogeosciences 14, 3275–3285. https://doi.org/10.5194/bg-14-3275-2017

Vasselon, V., Domaizon, I., Rimet, F., Kahlert, M., Bouchez, A., 2017. Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter? Freshwater Science 36, 162–177. https://doi.org/10.1086/690649

2016

Anneville, O.; Vogel, C.; Lobry, J.; Guillard, J.Fish communities in the Anthropocene: detecting drivers of changes in the deep peri-alpine Lake Geneva. Inland Waters in press

 Capo, Eric; Debroas, Didier; Arnaud, Fabien; Guillemot, Typhaine; Bichet, Vincent ; Millet, Laurent; Gauthier, Emilie; Massa, Charly; Develle, Anne-Lise; Pignol, Cécile; Lejzerowicz, Franck; Domaizon, Isabelle (2016) Long-term dynamics in microbial eukaryotes communities: a paleolimnological view based on sedimentary DNA. Molecular ecology In press. doi.org/10.1111/mec.13893

 Gallina N., M. Beniston and S. Jacquet. 2016. Forecasting cyanobacterial occurrence and importance in lakes: A case study with Planktothrix rubescens in Lake Geneva. Aquatic Sciences (in press) DOI 10.1007/s00027-016-0494-z

 Larras Floriane; Rimet Frederic; Gregorio Vincent; Berard Annette; Leboulanger Christophe; Montuelle Bernard; Bouchez Agnes (2016) Pollution-induced community tolerance (PICT) as a tool for monitoring Lake Geneva long-term in situ ecotoxic restoration from herbicide contamination. Env Sc Pollution Res DOI 10.1007/s11356-015-5302-0

 Minella, Marco; Leoni, Barbara; Salmaso, Nico; Savoye, Liliane; Sommaruga, Ruben; Vione, Davide (2016) Long-term trends of chemical and modelled photochemical parameters in four Alpine lakes. Sc Tot Env n° 541 10.1016/j.scitotenv.2015.08.149

 Parikka K. J., M. Le Romancer, N. Wauters and S. Jacquet. 2016. Deciphering the virus-to-prokaryote ratio: Insights into the virus-host relationships in a variety of ecosystems. Biological reviews doi 10.1111/brv.12271

 Perga, M.-E., S. C. Maberly, J.-P. Jenny, B. Alric, C. Pignol, and E. Naffrechoux (2016), A century of human-driven changes in the carbon dioxide concentration of lakes, Global Biogeochem. Cycles, 30, 93–104, doi:10.1002/2015GB005286.

 Perga, M.-E. ; Nellier, Y.; Naffrechoux, E. (in press) Bioconcentration may be favoured over biomagnification for fish PCB contamination in high altitude lakes. Inland Waters

 Rimet, Frederic; Chaumeil, Philippe; Keck, Francois; Kermarrec, Lenaig; Vasselon, Valentin; Kahlert, Maria; Franc, Alain; Bouchez, Agnes (2016) R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring. Database: the journal of biological databases and curation. DOI  10.1093/database/baw016

 Rimet, Frederic; Bouchez, Agnes; Tapolczai, Kalman (2016) Spatial heterogeneity of littoral benthic diatoms in a large lake: monitoring implications. Hydrobiologia DOI 10.1007/s10750-015-2629-y

 Soulignac, F. ; Vinçon-Leite, B. ; Lemaire B. J ; Scarati R ; Bonhomme, C. ; Dubois, P. ; et al. (2016). Performance assessment of a 3D hydrodynamic model using high temporal resolution measurements in a shallow urban lake. Environmental Modelling and Assessment. In press

2015

Nellier et al (2015) Mass budget in two high altitude lakes reveals their role as atmospheric PCB sinks. STOTEN, 511:203-213.

Tapolczai K., Anneville O., Padisak J., Salmaso N., Morabito G., Zohary T., Tadonléké R.D. et Rimet F. (2015) Occurrence and mass development of Mougeotia spp. (Zygnemataceae) in large, deep lakes. Hydrobiologia, 18, 441-458. DOI: 10.1007/s10750-014-2086-z

Anneville A. et al. (2015). BlueGreen Algae in a ''Greenhouse Century''? New Insights from Field Data on Climate Change Impacts on Cyanobacteria Abundance. Ecosystems. DOI: 10.1007/s1002101498376

Naffrechoux E, et al. (2015). Historical Profiles of PCB in Dated Sediment Cores suggest Recent Lake Contamination through the "Halo Effect". Environ Sci Technol., 49(3):1303-10. doi: 10.1021/es5043996

Billard E., Domaizon I., Tissot N., Arnaud F., Lyautey E. (2015) Multi-scale phylogenetic heterogeneity of archaea, bacteria, mathanogens and methanotrophs in lake sediments. Hydrobiologia, 751, 159-173. DOI 10.1007/s10750-015-2184-6

Taranu Z.E., Gregory-EavesI, Leavitt P.R., Bunting L, Buchaca T, Catalan J., Domaizon I., Guilizzoni P., Lami A., McGowan S., Moorhouse H., Morabito G., Pick F., Stevenson M.A.,  Thompson PL., R.D.Vinebrooke (2015)  Acceleration of cyanobacterial dominance in north temperate-subarctic lakes during the anthropocene. Ecology Letters, 18(4), 375-384. Doi: 10.1111/ele.12420

 Debroas D, Hugoni M., Domaizon I  (2015) Evidence for an active rare biosphere within freshwater protists community. Molecular Ecology, 24, 1236-1247.

Hugoni M.,  I. Domaizon, N. Taib, C. Biderre‐Petit, H. Agogué, P. E. Galand, D. Debroas, I. Mary (2015) Temporal dynamics of active Archaea in oxygen depleted zones of two deep lakes. Environmental Microbiology reports, 7(2), 321-329. Doi:10.1111/1758-2229.12251

2014

Berthon, V., Alric, B., Rimet, F. & Perga, M.-E. (2014). Sensitivity and responses of diatoms to climate warming in lakes heavily influenced by humans. Freshwater Biology, 59, 1755-1767.

Caudron, A., Lasne, E., Gillet, C., Guillard, J., Champigneulle, A. (2014). Thirty years of reoligotrophication do not contribute to restore self-sustaining fisheries of arctic charr, salvelinus alpinus, in lake Geneva. Fisheries Research. 154 : 165-71.

Frossard, V., Verneaux, v., Millet, L., Jenny,J.P., Arnaud, F., Magny, M., Perga, M.E. 2014. Depth-specific responses of the chironomid community to contrasting anthropogenic pressures: a paleolimnological perspective of 150 years. Freshwater Biology. 59:26-40

Hugoni M., I. Domaizon, N. Taib, C. Biderre‐Petit, H. Agogué, P. E. Galand, D. Debroas, I. Mary (2014)Temporal dynamics of active Archaea in oxygen depleted zones of two deep lakes.Environmental Microbiology reports. DOI: 10.1111/1758-2229.12251

Jacquet, S., Domaizon, I. & Anneville, O. (2014a). The need for ecological monitoring of freshwaters in a changing world: a case study of Lakes Annecy, Bourget, and Geneva. Environmental Monitoring and Assessment, 186, 3455-3476.

Jacquet, S., Kerimoglu, O., Rimet, F., Paolini, G. & Anneville, O. (2014b). Cyanobacterial bloom termination: the disappearance of Planktothrix rubescens from Lake Bourget (France) after restoration. Freshwater Biology, 59, 2472-2487.

Jenny, J.P., Wilhelm, B., Arnaud, F., Sabatier, P., Covex, C.G., Melo, A. et al. (2014). A 4D sedimentological approach to reconstructing the flood frequency and intensity of the Rhne River (Lake Bourget, NW European Alps). Journal of Paleolimnology, 51, 469-483.

Larras, F., Montuelle, B., Rimet, F., Chevre, N. & Bouchez, A. (2014b). Seasonal shift in the sensitivity of a natural benthic microalgal community to a herbicide mixture: impact on the protective level of thresholds derived from species sensitivity distributions. Ecotoxicology, 23, 1109-1123.

Parvathi, A., Zhong, X., Ram, A.S.P. & Jacquet, S. (2014). Dynamics of auto- and heterotrophic picoplankton and associated viruses in Lake Geneva. Hydrology and Earth System Sciences, 18, 1073-1087.

Savichtcheva O., D Debroas, ME Perga, F Arnaud, E Lyautey, A Kirkham, C Chardon, B Alric, I Domaizon (2014) Effects of nutrients and warming on Planktothrix dynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA. Freshwater Biology. doi:10.1111/fwb.12465

Sotton, B., Guillard, J., Anneville, O., Marechal, M., Savichtcheva, O. & Domaizon, I. (2014). Trophic transfer of microcystins through the lake pelagic food web: Evidence for the role of zooplankton as a vector in fish contamination. Science of the Total Environment, 466, 152-163.

Vincon-Leite, B., Lemaire, B.J., Viet Tran, K. & Tassin, B. (2014). Long-term temperature evolution in a deep sub-alpine lake, Lake Bourget, France: how a one-dimensional model improves its trend assessment. Hydrobiologia, 731, 49-64.

Zhong, X. & Jacquet, S. (2014a). Contrasting diversity of phycodnavirus signature genes in two large and western European lakes. Environmental Microbiology, 16, 759-773.

Zhong, X. & Jacquet, S. (2014b). Differing assemblage composition and dynamics in T4-like myophages of two neighbouring sub-alpine lakes. Freshwater Biology, 59, 1577-1595.

Zhong, X., Ram, A.S.P., Colombet, J. & Jacquet, S. (2014a). Variations in Abundance, Genome Size, Morphology, and Functional Role of the Virioplankton in Lakes Annecy and Bourget over a 1-Year Period. Microbial Ecology, 67, 66-82.

Zhong, X., Rimet, F. & Jacquet, S. (2014b). Seasonal variations in PCR-DGGE fingerprinted viruses infecting phytoplankton in large and deep peri-alpine lakes. Ecological Research, 29, 271-287.

2013

Alric, B., Jenny, J.-P., Berthon, V., Arnaud, F., Pignol, C., Reyss, J.-L. et al. (2013). Local forcings affect lake zooplankton vulnerability and response to climate warming. Ecology, 94, 2767-2780.

Berthon, V., Marchetto, A., Rimet, F., Dormia, E., Jenny, J.-P., Pignol, C. et al. (2013). Trophic history of French sub-Alpine lakes over the last similar to 150 years: phosphorus reconstruction and assessment of taphonomic biases. Journal of Limnology, 72, 417-429.

Annevile, A., Beniston, M., Gallina N., Gillet C., Jacquet S., Lazzarotto J., Merroud, M. (2013) L’empreinte du changement climatique sur le Léman. Archives des Sciences 66, 157-172.

Berdjeb, L., Pollet, T., Chardon, C., Jacquet, S. (2013). Spatio-temporal changes in the structure of archaeal communities in two deep freshwater lakes. FEMS Microbiology Ecology, 86 : 215-230

Domaizon, I., Savichtcheva, O., Debroas, D., Arnaud, F., Villar, C., Pignol, C. et al. (2013). DNA from lake sediments reveals the long-term dynamics and diversity of Synechococcus assemblages. Biogeosciences, 10, 3817-3838.

Frossard, V., Millet, L., Verneaux, V., Jenny, J.-P., Arnaud, F., Magny, M. et al. (2013). Chironomid assemblages in cores from multiple water depths reflect oxygen-driven changes in a deep French lake over the last 150 years. Journal of Paleolimnology, 50, 257-273.

Gillet, C., Lang, C., Dubois, J.P. 2013. Fluctuations of perch populations in Lake Geneva from 1984 to 2011 estimated from the number and size of egg strands collected in    two locations exposed to different fishing practices. Fisheries Management and Ecology. 20 : 484-493.

Guillard, J., Lebourges-Daussy, A., Balk, H., Colon, M., Jozwick, A., Golewska, M., (2014).Comparing hydroacoustic fish stock estimates in the pelagic zone of temperate deep lakes using three frequencies (70, 120, 200 kHz).Inland Waters, in press.

Hugoni, M., Etien, S., Bourges, A., Lepere, C., Domaizon, I., Mallet, C. et al. (2013). Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems. Research in Microbiology, 164, 360-370.

Jacquet, S., Chardon C., Personnic S., Domaizon, I. (2013). Are grazers and/or viruses structuring factors of the bacterial community in Lake Geneva? Advances in Microbiology, 3, 233-248.

Jenny, J.-P., Arnaud, F., Dorioz, J.-M., Covex, C.G., Frossard, V., Sabatier, P. et al. (2013). A spatiotemporal investigation of varved sediments highlights the dynamics of hypolimnetic hypoxia in a large hard-water lake over the last 150 years. Limnology and Oceanography, 58, 1395-1408.

Lepere, C., Domaizon, I., Taib, N., Mangot, J.-F., Bronner, G., Boucher, D. et al. (2013). Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems. Fems Microbiology Ecology, 85, 85-94.

Mangot, J.-F., Domaizon, I., Taib, N., Marouni, N., Duffaud, E., Bronner, G. et al. (2013). Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes. Environmental Microbiology, 15, 1745-1758.

Perga, M.-E., Domaizon, I., Guillard, J., Hamelet, V. & Anneville, O. (2013). Are cyanobacterial blooms trophic dead ends? Oecologia, 172, 551-562.

Richard, A. Jane O’Rourkea, Arnaud Caudronb,c, Franck Cattanéoa et al (2013). Effects of passive integrated transponder tagging methods on survival, tag retention and growth of age-0 brown trout. Fisheries Research. 145 : 37-42.

Taib N., J. F. Mangot, I. Domaizon, G. Bronner, and D. Debroas. (2013). Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity. PLOsOne, 8(3):e58950.

Yule, D.L., Evrard, L.M., Cachera, S., Colon, M. & Guillard, J. (2013). Comparing two fish sampling standards over time: largely congruent results but with caveats. Freshwater Biology, 58, 2074-2088.

Zhong, X., Berdjeb, L. & Jacquet, S. (2013). Temporal dynamics and structure of picocyanobacteria and cyanomyoviruses in two large and deep peri-alpine lakes. Fems Microbiology Ecology, 86, 312-326.

Zhong, X. & Jacquet, S. (2013). Prevalence of Viral Photosynthetic and Capsid Protein Genes from Cyanophages in Two Large and Deep Perialpine Lakes. Applied and Environmental Microbiology, 79, 7169-7178.

2012

Arnaud, F., Revillon, S., Debret, M., Revel, M., Chapron, E., Jacob, J. et al. (2012). Lake Bourget regional erosion patterns reconstruction reveals Holocene NW European Alps soil evolution and paleohydrology. Quaternary Science Reviews, 51, 81-92.

Emmrich M., Winfield I.J., Guillard J., Rustadbakken A., Vergès C., VoltaA P., Jeppesen E., Lauridsen T., Holmgren K., Argillier C., Mehner T. (2012). Strong correspondence between gillnet catch per unit effort and hydroacoustically derived fish biomass in stratified lakes, Freshw. Biol., 57(12), 2436–2448.

Gerdeaux, D. & Dufour, E. (2012). Inferring occurrence of growth checks in pike (Esox lucius) scales by using sequential isotopic analysis of otoliths. Rapid Communications in Mass Spectrometry, 26, 785-792.

Gregorio, V., Buechi, L., Anneville, O., Rimet, F., Bouchez, A. & Chevre, N. (2012). Risk of herbicide mixtures as a key parameter to explain phytoplankton fluctuation in a great lake: the case of Lake Geneva, Switzerland. Ecotoxicology, 21, 2306-2318.

Larras F., Bouchez A., Rimet F., Montuelle B., 2012 - Assessment of Species Sensitivity Distribution of benthic diatoms to herbicides using single species bioassays. PLoS ONE 7(8).

Jacquet, S., Anneville, O., Domaizon, I. (2012) Evolution de paramètres clés indicateurs de la qualité des eaux et du fonctionnement écologique des grands lacs péri-alpins (Léman, Annecy, Bourget): Etude comparative de trajectoires de restauration post-eutrophisation. Arch. Sci., 65, 225-242.

Jeppesen E., Mehner T., Winfield I.J., Kangur K., Sarvala J.,  Gerdeaux D., Rask M., Malmquist H. J., Holmgren K.,  Volta P., Romo S.,  Eckmann R.,  et al. (2012). Impacts of climate warming on the long-term dynamics of key fish species in 24 European lakes. Hydrobiologia, 694, p. 1-39.

Magny, M., Arnaud, F., Billaud, Y. & Marguet, A. (2012). Lake-level fluctuations at Lake Bourget (eastern France) around 4500-3500?cal. a BP and their palaeoclimatic and archaeological implications. Journal of Quaternary Science, 27, 494-502.

Perrier, C., Molinero, J.C., Gerdeaux, D. & Anneville, O. (2012). Effects of temperature and food supply on the growth of whitefish Coregonus lavaretus larvae in an oligotrophic peri-alpine lake. Journal of Fish Biology, 81, 1501-1513.

Roux, S., Enault, F., Robin, A., Ravet, V., Personnic, S., Theil, S. et al. (2012). Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics. Plos One, 7.

Sotton, B., Guillard, J., Bony, S., Devaux, A., Domaizon, I., Givaudan, N. et al. (2012). Impact of Toxic Cyanobacterial Blooms on Eurasian Perch (Perca fluviatilis): Experimental Study and In Situ Observations in a Peri-Alpine Lake. Plos One, 7.

Sotton B., Devaux A., Givaudan N., Guillard J., Domaizon I., Bony S., Anneville O. (2012) Short-term uptake of microcystin-LR by Coregonus lavaretus: GST activity and genotoxicit. Ecotoxicology, 21, p1788-1796.

Trevisan, D., Quetin, P., Barbet, D. & Dorioz, J.M. (2012). POPEYE: A river-load oriented model to evaluate the efficiency of environmental policy measures for reducing phosphorus losses. Journal of Hydrology, 450, 254-266.

2011

Alric B., Perga M.E., 2011 - Effects of production, sedimentation and taphonomic processes on the composition and size structure of sedimenting cladoceran remains in a large deep subalpine lake : paleo-ecological implications. Hydrobiologia, 676, 1, p. 101-116.

Anneville, O., Berthon, V., Glippa, O., Mahjoub, M.-S., Molinero, J.C. & Souissi, S. (2011). Ontogenetic dietary changes of whitefish larvae: insights from field and experimental observations. Environmental Biology of Fishes, 91, 27-38.

Berdjeb, L., Ghiglione, J.-F. & Jacquet, S. (2011a). Bottom-Up versus Top-Down Control of Hypo- and Epilimnion Free-Living Bacterial Community Structures in Two Neighboring Freshwater Lakes. Applied and Environmental Microbiology, 77, 3591-3599.

Berdjeb, L., Ghiglione, J.F., Domaizon, I. & Jacquet, S. (2011b). A 2-Year Assessment of the Main Environmental Factors Driving the Free-Living Bacterial Community Structure in Lake Bourget (France). Microbial Ecology, 61, 941-954.

Berdjeb, L., Pollet, T., Domaizon, I. & Jacquet, S. (2011c). Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. Bmc Microbiology, 11.

Cuypers, Y., Vincon-Leite, B., Groleau, A., Tassin, B. & Humbert, J.-F. (2011). Impact of internal waves on the spatial distribution of Planktothrix rubescens (cyanobacteria) in an alpine lake. Isme Journal, 5, 580-589.

Devaux A., Fiat L., Gillet C., Bony S. (2011). Reproduction impairment following paternal genotoxin exposure in brown trout (Salmo trutta) and Arctic charr (Salvelinus alpinus). Aquat. Toxicol., 101, 405-411.

Gallina, N., Anneville, O. & Beniston, M. (2011). Impacts of extreme air temperatures on cyanobacteria in five deep peri-Alpine lakes. Journal of Limnology, 70, 186-196.

Gerdeaux, D. (2011). Does global warming threaten the dynamics of Arctic charr in Lake Geneva? Hydrobiologia, 660, 69-78.

Guillard, J., Fernandes, P., Laloe, T. & Brehmer, P. (2011). Three-dimensional internal spatial structure of young-of-the-year pelagic freshwater fish provides evidence for the identification of fish school species. Limnology and Oceanography-Methods, 9, 322-328.

Janjua, M.Y. & Gerdeaux, D. (2011). Evaluation of food web and fish dietary niches in oligotrophic Lake Annecy by gut content and stable isotope analysis. Lake and Reservoir Management, 27, 115-127.

Le Vu, B., Vincon-Leite, B., Lemaire, B.J., Bensoussan, N., Calzas, M., Drezen, C. et al. (2011). High-frequency monitoring of phytoplankton dynamics within the European water framework directive: application to metalimnetic cyanobacteria. Biogeochemistry, 106, 229-242.

Mangot, J., Debroas, D. & Domaizon, I. (2011). Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review. Hydrobiologia, 659, 37-48.

Pollet T., Tadonléké R.D., Humbert J.-F. (2011). Comparison of primer sets for the study of Planctomycetes communities in lentic freshwater ecosystems. Environ. Microbiol. Rep., 3 (2) 254-261.

Pollet T., Tadonléké R.D., Humbert J.-F. (2011). Spatio-temporal changes in the structure and composition of a less-abundant bacterial Phylum (Plancomycetes) in two perialpine lake. Appl. Environ. Microbiol., 77 (14) 4811-4821.

Poulain T.,   Guillard J.,  Argillier C. (2011) Détermination des substrats lacustres par hydroacoustique : application au suivit de qualité morphologique.  J.  Sci.  Hal.  Aquat.,  3, 67-71.

Savichtcheva, O., Debroas, D., Kurmayer, R., Villar, C., Jenny, J.P., Arnaud, F. et al. (2011). Quantitative PCR Enumeration of Total/Toxic Planktothrix rubescens and Total Cyanobacteria in Preserved DNA Isolated from Lake Sediments. Applied and Environmental Microbiology, 77, 8744-8753.

Sotton, B., Anneville, O., Cadel-Six, S., Domaizon, I., Krys, S. & Guillard, J. (2011). Spatial match between Planktothrix rubescens and whitefish in a mesotrophic peri-alpine lake: Evidence of toxins accumulation. Harmful Algae, 10, 749-758.

Thomas, R., Berdjeb, L., Sime-Ngando, T. & Jacquet, S. (2011). Viral abundance, production, decay rates and life strategies (lysogeny versus lysis) in Lake Bourget (France). Environmental Microbiology, 13, 616-630.

2010

Anneville, O., Molinero, J.C., Souissi, S. & Gerdeaux, D. (2010). Seasonal and interannual variability of cladoceran communities in two peri-alpine lakes: uncoupled response to the 2003 heat wave. Journal of Plankton Research, 32, 913-925.

Bryhn, A.C., Girel, C., Paolini, G. & Jacquet, S. (2010). Predicting future effects from nutrient abatement and climate change on phosphorus concentrations in Lake Bourget, France. Ecological Modelling, 221, 1440-1450.

Crespin, J., Sylvestre, F., Alexandre, A., Sonzogni, C., Pailles, C. & Perga, M.-E. (2010). Re-examination of the temperature-dependent relationship between delta O-18(diatoms) and delta O-18(lake water) and implications for paleoclimate inferences. Journal of Paleolimnology, 44, 547-557.

Giguet-Covex, C., Arnaud, F., Poulenard, J., Enters, D., Reyss, J.-L., Millet, L. et al. (2010). Sedimentological and geochemical records of past trophic state and hypolimnetic anoxia in large, hard-water Lake Bourget, French Alps. Journal of Paleolimnology, 43, 171-190.

Guillard J., Balay P., Colon M., Brehmer P. (2010) Survey boat effect on YOY fish schools in a pre-alpine lake: evidence from multibeam sonar and split-beam echosounder data. Ecol. Freshw. Fish. 19 (3)373–380.

Janjua, M.Y., Zanella, D. & Gerdeaux, D. (2010). Comparative effectiveness, growth and dispersal of stocked Arctic char (Salvelinus alpinus) from different origins in Lake Annecy. Knowledge and Management of Aquatic Ecosystems. 397 (4), 12.

Lepere, C., Masquelier, S., Mangot, J.-F., Debroas, D. & Domaizon, I. (2010). Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach. Isme Journal, 4, 1509-1519.

Millet, L., Giguet-Covex, C., Verneaux, V., Druart, J.-C., Adatte, T. & Arnaud, F. (2010). Reconstruction of the recent history of a large deep prealpine lake (Lake Bourget, France) using subfossil chironomids, diatoms, and organic matter analysis: towards the definition of a lake-specific reference state. Journal of Paleolimnology, 44, 963-978.

Perga, M.-E. (2010). Potential of delta C-13 and delta N-15 of cladoceran subfossil exoskeletons for paleo-ecological studies. Journal of Paleolimnology, 44, 387-395.

Perga, M.-E., Desmet, M., Enters, D. & Reyss, J.-L. (2010). A century of bottom-up- and top-down-driven changes on a lake planktonic food web: A paleoecological and paleoisotopic study of Lake Annecy, France. Limnology and Oceanography, 55, 803-816.

Tadonleke R. D. (2010) Evidence of warming effects on phytoplankton productivity rates and their dependence on eutrophication status. Limnol. Oceanogr., 55 (3), 973-982.