2013 - Guilhot N, Theil S, Choulet F, Caron C, Cormier A, Feuillet, Leroy P
TriAnnot: un outil bioinformatique puissant pour l’identification de genes d’intérêt agronomique dans les génomes des plantes. In: JOBIM, 1-4 Juillet 2013, Toulouse, France (Poster)

2013 - Leroy P
A pipeline for Structural & Functional Annotation in Plants - TriAnnot.
In: Rencontre des Informaticiens Clermontois pour la recherche, June 4th, 2013, Université Blaise-Pascal, Clermont-Ferrand, France (Talk invited)

2013 - Leroy P
Annotating triticeae sequences: the TriAnnot pipeline.
In: Séminaire Science de la Vie, March 21th, 2013, LIMOS-ISIMA, Université Blaise-Pascal, Clermont-Ferrand, France (Talk invited)

2013 - Plomion C, Aury J-M, Amselem J, Belser C, Berges H, Bodénès C, Chancerel E, Ehrenmann F, Faivre-Rampant P, Klopp C, Kremer A, Labadie K, Lalanne C, Leroy P, Lesur I, Martin F, Noirot C, Le Provost G, Quesneville H, Salse J, DaSilva C, Steinbach D, Villate L
Development and use of Genomic Resources to Study Oak Tree Adaptation (P0483)
In: Plant & Animal Genome XXI, January 12-16, 2013, San Diego, CA (USA)

2013 - Choulet F, Theil S, Daron J, Glover N, Guilhot N, Leroy P, Pingault L, Paux E, Sourdille P, Alberti A, Barbe V, Mangenot S, Couloux A, Aury J-M, Bellec A, Berges H, Simkova H, Dolezel J, Alaux M, Quesneville H, Wincker P, Feuiller C
Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3B (W456)
In: Plant & Animal Genome XXI, January 12-16, 2013, San Diego, CA (USA)

2012 - Leroy P, Guilhot N, Sakai H, Theil S, Choulet F, Viseux C, Alaux M, Itoh T, Quesneville H, Feuillet C
A High Performance Pipeline for the Automated Structural and Functional Annotation of Plant Genomes - state of arts
In: Japan (MAFF) – French (INRA) Seminar, December 11, 2012, Kyoto, Japan

2012 - Leroy P, Guilhot N, Sakai H, Bernard A, Theil S, Choulet F, Reboux S, Viseux C, Amano N, Giacomoni F, Alaux M, Legeai F, Cerutti L, Itoh T, Quesneville H, Feuillet C
Annotating Triticeae sequences: the TriAnnot pipeline
In: 1st transPLANT user training workshop, November 12-13, 2012, Versailles, France

2012 - Leroy P
WP5 – Task 5.4 report.
In:TriticeaeGenome final meeting , May 14-16, 2012, Versailles, France

2012 - Guilhot N, Leroy P, Theil S, Choulet F, Reboux S, Alaux M, Reichstadt M, Quesneville H, Feuillet C.
The TriAnnot automated annotation pipeline: Making sense of the output files and information
In: Plant & Animal Genome XX, January 14-18, 2012, San Diego, CA (USA)

2011 - Leroy P, Guilhot N, Sakai H, Bernard A, Choulet F, Pelegrin C, Reboux S, Flutre T, Amano N, Seidel M, Ohyanagi H, Alaux M, Numa H, Tanaka T, Mayer K, Itoh T, Quesneville H, Feuillet C
TriAnnot: a user friendly web interface for structural and functional automatic annotation of plant genomes.
In: Plant & Animal Genome XIX, January 15-19, 2011, San Diego, CA (USA)

2011 - Leroy P, Guilhot N, Sakai H, Bernard A, Choulet F, Pelegrin C, Reboux S, Flutre T, Amano N, Seidel M, Ohyanagi H, Alaux M, Numa H, Tanaka T, Mayer K, Itoh T, Quesneville H, Feuillet C
TriAnnot: a user friendly web interface for structural and functional automatic annotation of plant genomes.
In: Comparative & Regulatory Genomics in Plants, April 11-12, 2011, Gent, Belgium

2011 - Leroy P
Nouveau paradigme pour l’analyse des données biologique.
In: Journées GRISBI 2011, Mai 26, 2011, PRABI-IBCP, Lyon, France

2011 - Leroy P, Bernard A, Guilhot N, Theil S, Alaux M, Reboux S, Inizean O, Choulet F, Sakai H, Tanaka T, Itoh T, Quesneville H, Feuillet C
TriAnnot: a high performance pipeline for the automated structural and functional of plant genomes.
In: JOBIM, June 28 – July 1er, 2011, Paris, France, pp 217. Eds E. Barillot, C. Froidevaux & E Rocha

2011 - Leroy P
Tentative de mise sur Grille de Calcul du pipeline d’annotation automatique structural et fonctionnel TriAnnot dans le cadre du projet Européen LifeGrid 2006-2008.
In: Journée de sensibilisation au calcul intensif en biologie intégrative et écologies, Septembre 14, 2011, Bordeaux, France

2011 - Leroy P
TriAnnot - un pipeline parallélisé (cluster) pour l'annotation structurel et fonctionnel des génomes de plantes.
In: TWIST meeting, Septembre 19, 2011, Paris, France

2011 - Leroy P, Bernard A, Guilhot N, Theil S, Alaux M, Reboux S, Inizean O, Choulet F, Sakai H, Tanaka T, Itoh T, Quesneville H, Feuillet C
TriAnnot: a high performance pipeline for the automated structural and functional of plant genomes.
In: Anais 28° encontro sobre temas de genetic e malhoramento, Vol 28, “Genomica e bioinformatica”, Outubro 10 – 11, 2011, Piracicaba, SP, Brazil, pp 31. Eds C.B. Monteiro-Vitorello, J.B. Pinheiro, M.L. Carneiro Vieira, G. Bandel, A. De Mello Varani & M. Mendes Brandao

2010 - Leroy P, Guilhot N, Sakai H, Choulet F, Seidel M, Ohyanagi H, Bernard A, Pelegrin C, Flutre T, Reboux S, Alaux M, Numa H, Tanaka T, Amano N, Mayer K, Itoh T, Quesneville H, Feuillet C
TriAnnot V2.0 a user friendly web interface for monocot genomic sequences automatic annotation.
In: JOBIM – 7/9 September 2010, Montpellier, France

2010 - Leroy P, Guilhot N, Sakai H, Choulet F, Seidel M, Ohyanagi H, Bernard A, Pelegrin C, Flutre T, Reboux S, Alaux M, Numa H, Tanaka T, Amano N, Mayer K, Itoh T, Quesneville H, Feuillet C
TriAnnot: un pipeline pour l’annotation du génome du blé tendre dans le cadre de l’IWGSC.
In: JOBIM satellites « Annotations des génomes et génomique comparée » – 10th September 2010, Montpellier, France

2009 - Leroy P
Annotation of the Wheat Chromosome 3B.
In: Seminar at the University of Haifa, November 4th, 2009, Haïfa, Israel

2009 - Leroy P, Flutre T, Sakai H, Numa H, Choulet F, Wicker T, Tanaka T, Mayer K, Quesneville H, Itoh T and Feuillet C
TriAnnot: an automatic pipeline forTriticeaegenome annotation.
In: 19th ITMI workshop – 3rd COST meeting, August 1st – September 4th, 2009, Clermont-Ferrand, France

2009 - Leroy P
Wheat Genetics, Genomics and Genome Annotation.
In: Seminar at the University of Georgia, September 16th, 2009, Athens, US

2009 - Leroy P, Choulet F, Flutre T, Reboux S, Sakai H, Numa I, Wicker T, Tanaka T, Itoh T, Feuillet C, Quesneville H and Mayer K
Performance and progress in automatedTriticeaegenome annotation – TriAnnot pipeline.
In: Joint COST Tritigene/TriticeaeGenome project workshop, April 22-24, 2009, Gatersleben, Germany (Talk invited)

2009 - Leroy P, Giacomoni F, Bernard A, Sakai H, Reichstadt M, Guilhot N, Choulet F, Reboux S, Alaux M, Flutre T, Caron C, Claude A, Mahul A, Liauzu M, Tanaka T, Numa I, Itoh T, Quesneville H and Feuillet C
Structural And Functional Annotation Of Wheat And Barley Genome Sequences With TriAnnot Pipeline.
In: Plant & Animal Genome XVII, January 10-14, 2009, San Diego, CA (USA) (CP848)

2008 - Leroy P
Développement d’un pipeline d’annotation de séquence génomique d’espèces végétales sur la grille régionale AUVERGRID.
In: Conférence de clôture du programme Régional d’Actions Innovatrices e-nnovergne LifeGrid, 24-25 Novembre 2008, Centre d’Exposition et des Congrès Polydôme de Clermont-Ferrand, France

2008 - Leroy P
Wheat Genomics & a pipeline for automated annotation of wheat BAC sequences.
In: The 5th Rice Annotation Project Meeting, 14-15 November 2008, AIST Bio-IT Research Building 11F, Tokyo, Japan

2008 - Leroy P
Structural and Functional Annotation of wheat and barley genome sequences with TriAnnot pipeline.
In: Abstracts BIOGRALE 2008 ReNaBi GRISBI “Grille, Support pour la bioinformatique”, 6-7 Novembre 2008, Institut de Biologie et Chimie des Protéines, IBCP, Lyon, France (P6)

2008 - Leroy P, Reichstadt M, Giacomoni F, Charpentier C, Alaux M, Reboux S, Claude A, Liazu M, Tanaka T, Itoh T
TriAnnotPipelineGRID, a tool for the automated annotation of wheat BAC sequences.
In: The 3rd EGEE User Forum, 11-14 Février 2008, Le Polydôme, Clermont-Ferrand, France (Life Sciences session)

2007 - Leroy P, Legeai F, Alaux M, Reboux S, Bernard A, Reichstadt M, Claude A, Liazu M, Tanaka T, Itoh T, Quesneville H, Feuillet C
Structural and comparative genomics in bread wheat: the TriAnnoPipeline, a tool for the automated annotation of BAC sequences.
In: The 5th International Symposium of Rice Functional Genomics, October 15-17th, 2007, Epochal, Tsukuba, Japan (C5-03)

2007 - Leroy P, Legeai F, Alaux M, Reboux S, Bernard A, Reichstadt M, Claude A, Liazu M, Tanaka T, Itoh T, Quesneville H, Feuillet C
Structural and comparative genomics in bread wheat: the TriAnnoPipeline, a tool for the automated annotation of BAC sequences.
In: The 5th Japanese-French seminar on “Food safety, novel food, and sustainable environment to promote animal and human health”, October 10-12th, 2007, Hotel Kagetsuen, Hakone, Japan (pp17-20)

2007 - Leroy P, Legeai F, Gicquello E, Bernard A, Sapet F, Houis B, Laubin B, Cerutti L, Guilhot N, Feuillet C
Structutal & comparative genomics in wheat – the TriAnnot Project.
In: Plant & Animal Genome XV, January 13-17, 2007, San Diego, CA (USA). p. 319 (Poster P872)

2006 - Leroy P, Legeai F, Gicquello E, Bernard A, Sapet F, Houis B, Laubin B, Cerutti L, Guilhot N, Feuillet C
Développement d’un site Web : TriAnnotProject pour l’annotation automatique et l’archivage de séquences génomiques de la famille desTriticeae.
In: Rencontres Scientifiques du DGAP, 25-27 Septembre 2006, Batz-sur-Mer

2006 - Leroy P, Legeai F, Gicquello E, Itoh T, Feuillet C.
Structural and comparative genomics in bread wheat, the TriAnnotPipeline project.
In: 4th INRA/MAFF French-Japanese Seminar on Food Safety, Novel Food, and Sustainable Environment to promote Animal and Human Health. October 12-14, 2006, IECB Conference Hall, Pessac, France