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INRA
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Dernière mise à jour : Mai 2018

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Publications

2022

Mafakheri H, Taghavi SM, Zarei S, Rahimi T, Hasannezhad MS, Portier P, Fischer-Le Saux M, Dimkić I, Koebnik R, Kuzmanović N, and Osdaghi E (2022). Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains. Microbiol Spectr. e0057721. doi: 10.1128/spectrum.00577-21.

2021

Mafakheri H, Taghavi SM, Zarei S, Rahimi T, Hasannezhad MS, Portier P, Fischer-Le Saux M, Dimkić I, Koebnik R, Kuzmanović N, and Osdaghi E (2022). Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains. Microbiol Spectr. e0057721. doi: 10.1128/spectrum.00577-21.

Becerra-Rodríguez C, Taghouti G, Portier P, Dequin S, Casal M, Paiva S, and Galeote V (2021). Yeast Plasma Membrane Fungal Oligopeptide Transporters Display Distinct Substrate Preferences despite Their High Sequence Identity. J Fungi (Basel). 7(11): 963. doi: 10.3390/jof7110963.

Hayat Hage, Shingo Miyauchi, Máté Virágh, Elodie Drula, Byoungnam Min, Delphine Chaduli,David Navarro, Anne Favel, Manon Norest, Laurence Lesage-Meessen, Balázs Bálint, Zsolt Merényi, Laura de Eugenio, Emmanuelle Morin, Angel T. Martínez, Petr Baldrian, Martina Štursová, María Jesús Martínez, Cenek Novotny, Jon K. Magnuson, Joey W. Spatafora, Sundy Maurice, Jasmyn Pangilinan, Willian Andreopoulos, Kurt LaButti, Hope Hundley, Hyunsoo Na, Alan Kuo, Kerrie Barry, Anna Lipzen, Bernard Henrissat, Robert Riley, Steven Ahrendt, László G. Nagy, Igor V. Grigoriev, Francis Martin, Marie-Noëlle Rosso (2021). Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay. Environ Microbiol. 23(10): 5716–5732. doi: 10.1111/1462-2920.15423.

Canon F, Maillard M-B, Henry G, Thierry A, and Gagnaire V (2021). Positive Interactions between Lactic Acid Bacteria Promoted by Nitrogen-Based Nutritional Dependencies. Appl Environ Microbiol. 87(20): e0105521. doi: 10.1128/AEM.01055-21.

Połomska X, Neuvéglise C, Zyzak J, Żarowska B, Casaregola S, and Lazar Z (2021). New Cytoplasmic Virus-Like Elements (VLEs) in the Yeast Debaryomyces hansenii. Toxins (Basel). 13(9): 615. doi: 10.3390/toxins13090615.

Ayoub M-J, Legras J-L, Abi-Nakhoul P, Nguyen H-V, Saliba R, and Gaillardin C (2021). Lebanon’s Native Oenological Saccharomyces cerevisiae Flora: Assessment of Different Aspects of Genetic Diversity and Evaluation of Winemaking Potential. J Fungi (Basel). 7(8): 678. doi: 10.3390/jof7080678.

Daou M, Bisotto A, Haon M, Oliveira Correia L, Cottyn B, Drula E, Garajová S, Bertrand E, Record E, Navarro D, Raouche S, Baumberger S, and Faulds CB (2021). A Putative Lignin Copper Oxidase from Trichoderma reesei. J Fungi (Basel). 7(8): 643. doi: 10.3390/jof7080643.

Navarro D, Chaduli D, Taussac S, Lesage-Meessen L, Grisel S, Haon M, Callac P, Courtecuisse R, Decock C, Dupont J, Richard-Forget F, Fournier J, Guinberteau J, Lechat C, Moreau P-A, Pinson-Gadais L, Rivoire B, Sage L, Welti S, Rosso M-N, Berrin J-G, Bissaro B, and Favel A (2021). Large-scale phenotyping of 1,000 fungal strains for the degradation of non-natural, industrial compounds. Commun Biol. 4(1): 871. doi: 10.1038/s42003-021-02401-w.

Tesnière C, Pradal M, and Legras J-L (2021). Sterol uptake analysis in Saccharomyces and non-Saccharomyces wine yeast species. FEMS Yeast Res. 21(3): foab020. doi: 10.1093/femsyr/foab020.

Grandmontagne D, Navarro D, Neugnot-Roux V, Ladevèze S, and Berrin J-G (2021). The Secretomes of Aspergillus japonicus and Aspergillus terreus Supplement the Rovabio® Enzyme Cocktail for the Degradation of Soybean Meal for Animal Feed. J Fungi (Basel). 7(4): 278. doi: 10.3390/jof7040278.

Perruchon O, Schmitz-Afonso I, Grondin C, Casaregola S, Afonso C, and Elomri A (2021). Combination of UHPLC-MS/MS-molecular networking approach and FTICR-MS for the metabolic profiling of Saccharomyces cerevisiae. J Pharm Biomed Anal. 195: 113857. doi: 10.1016/j.jpba.2020.113857.

Cadel-Six S, Cherchame E, Douarre P-E, Tang Y, Felten A, Barbet P, Litrup E, Banerji S, Simon S, Pasquali F, Gourmelon M, Mensah N, Borowiak M, Mistou M-Y, and Petrovska L (2021). The Spatiotemporal Dynamics and Microevolution Events That Favored the Success of the Highly Clonal Multidrug-Resistant Monophasic Salmonella Typhimurium Circulating in Europe. Front Microbiol. 12: 651124. doi: 10.3389/fmicb.2021.651124.

A Thierry and F  Valence . Aliments fermentés : une diversité de bénéfices santé potentiels encore peu documentés. Traité "Microbiote et Santé" coordonné par Nathalie Delzenne et M. Lecerf édité par Elsevier Masson (2021). À paraître

F  Guyomarc’h , G Arvisenet , S Bouhallab , F Canon ,S-M Deutsch , V Drigon, D Dupont , M-H Famelart , G Garric , E Guédon , T Guyot , M Hiolle , G  Jan , Y  Le Loir, V  Lechevalier, F. Nau, S. Pezennec , A.Thierry , F. Valence , V. Gagnaire.  Mixing milk, egg and plant resources to obtain safe and tasty foods with environmental and health benefits. Trends in Food Science & Technology 108 (2021) 119–132

2020

Miyauchi S, Hage H, Drula E, Lesage-Meessen L, Berrin JG, Navarro D, Favel A, Chaduli D, Grisel S, Haon M, Piumi F, Levasseur A, Lomascolo A, Ahrendt S, Barry K, LaButti KM, Chevret D, Daum C, Mariette J, Klopp C, Cullen D, de Vries RP, Gathman AC, Hainaut M, Henrissat B, Hildén KS, Kües U, Lilly W, Lipzen A, Mäkelä MR, Martinez AT, Morel-Rouhier M, Morin E, Pangilinan J, Ram AFJ, Wösten HAB, Ruiz-Dueñas FJ, Riley R, Record E, Grigoriev IV, Rosso MN. Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.DNA Res.DOI: https://doi.org/10.1093/dnares/dsaa011

M Shrestha , H Garreau, E Balmisse, B Bed’hom, I David, E Guitton, E Helloin,G Lenoir, M Maupin, R Robert, F Lantier, M Gunia. Genetic parameters of resistance to pasteurellosis using novel response traits in rabbits. Genet Sel Evol. 2020;52(1):34. Published 2020 Jun 26. doi:10.1186/s12711-020-00552-8

F Canon, M Mariadassou, M-B Maillard, H Falentin , S Parayre, M-N Madec , F Valence, G Henry, V Laroute, M-L Daveran-Mingot, M Cocaign-Bousquet , A Thierry  and V Gagnaire  Function-Driven Design of Lactic Acid Bacteria Co-cultures to Produce New Fermented Food Associating Milk and Lupin. Front. Microbiol. (2020). 11:584163.doi: 10.3389/fmicb.2020.584163

Ben Ali, W.; Navarro, D.; Kumar, A.; Drula, E.; Turbé-Doan, A.; Correia, L.O.; Baumberger, S.; Bertrand, E.; Faulds, C.B.; Henrissat, B.; Sciara, G.; Mechichi, T.; Record, E. Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions. Mar. Drugs DOI: 10.3390/md18090461

L Garnier, M Penland , A Thierry , M-B Maillard, J Jardin, M Coton, M Leyva Salas, E Coton, F Valence, J. Mounier  Antifungal activity of fermented dairy ingredients: Identification of antifungal compounds. International Journal of Food Microbiology (2020). 322(2).https://doi.org/10.1016/j.ijfoodmicro.2020.108574

M Martins, A Fusiegera , R Freitas, F Valence, L Nero, A Carvalho.  Novel sequence types of Lactococcus lactis subsp. lactis obtained from Brazilian dairy production environments. LWT - Food Science and Technologiy 124 (2020).https://doi.org/10.1016/j.lwt.2020.109146

O Harlé, H Falentin,  J Niay, F Valence, V Chuat, M-B Maillard, É Guédon, S-M Deutsch, A ThierryDiversity of metabolic profiles of a broad range of lactic acid bacteria in soy juice fermentation. Food Microbiology 89 (2020) 103410

F Canon, M Mariadassou, M-B Maillard, H Falentin, S Parayre , M-N Madec, F Valence, G Henry, V Laroute, M-L Daveran-Mingot, M Cocaign-Bousquet, A Thierry and V Gagnaire . Function-Driven Design of Lactic Acid Bacteria Co-cultures to Produce New Fermented Food Associating Milk and Lupin. Frontiers in microbiology 11 (2019) DOI=10.3389/fmicb.2020.584163    

Ben Ali, W, Chaduli, D, Navarro, D, Lechat, C, Turbé-Doan, A, Bertrand, E, Faulds, CB., Sciara, G, Lesage-Meessen, L, Record, E, Mechichi, T Screening of five marine-derived fungal strains for their potential to produce oxidases with laccase activities suitable for biotechnological applications BMC Biotechnology DOI: https://doi.org/10.1186/s12896-020-00617-y

Labourel A, Frandsen KEH, Zhang F, Brouilly N, Grisel S, Haon M, Ciano L, Ropartz D, Fanuel M, Martin F, Navarro D, Rosso MN, Tandrup T, Bissaro B, Johansen KS, Zerva A, Walton PH, Henrissat B, Leggio LL, Berrin JG. A fungal family of lytic polysaccharide monooxygenase-like copper proteins. Nat Chem Biol. DOI: 10.1038/s41589-019-0438-8

Osdaghi E., Rahimi T., TaghaviS.M., Ansari M., Zarei S., Portier P., Briand M., Jacques M-A. Comparative Genomics and Phylogenetic Analyses Suggest Several Novel Species within Clavibacter sp. Including Non-Pathogenic Tomato-Associated Strains. AEM (2020). 86:e02873-19. 10.1128/aem.02873-19

Cohen S.P., Luna E.K., Lang J.M.,Ziegle J., Chang C., Leach J.E., Fischer-Le Saux M., Portier P., Koebnik R., Jacobs J.M. High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing. Plant Disease (2020) 104(4): 1011-1012. DOI : 10.1094/pdis-11-19-2393-a

Gerlin L, Cottret L, Cesbron S, Taghouti G, Jacques M-A, Genin S, Baroukh C. Genome-scale investigation of the metabolic determinants generating bacterial fastidious growth. mSystems (2020) 5:e00698-19. https://doi.org/10.1128/mSystems.00698-19

Morinière L, Burlet A, Rosenthal ER, Nesme X, Portier P, Bull CT, Lavire C, Fischer-Le Saux M, Bertolla F. Clarifying the taxonomy of the causal agent of bacterial leaf spot of lettuce through a polyphasic approach reveals that Xanthomonas cynarae Trébaol 2000 emend. Timilsina et al. 2019 is a later heterotypic synonym of Xanthomonas hortorum Vauterin et al. 1995. Systematic and Applied Microbiology. (2020). 43(4): 126087 https://doi.org/10.1016/j.syapm.2020.126087

Portier P., Pédron J., Taghouti G., Dutrieux C., Barny M-A., Updated taxonomy of Pectobacterium genus in the CIRM-CFBP bacterial collection: when newly described specie sreveal “old” endemic population. Microorganisms. 8(9): 1441 doi:10.3390/microorganisms8091441

Koebnik R., Burokiene D., Bragard C., Chang C., Fischer-Le Saux M., Kölliker R., Lang J., Leach J., Luna E., Portier P., Sagia A., Ziegle J., Cohen S. P., Jacobs J. The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads. Phytopathology (2020) in press. 10.1094/phyto-07-20-0273-sc

Bilek F.N. , Rezki M.A., Grondin C., Yahia N., Bekki A. Plant growth promoting characteristics and stress tolerance of yeasts isolated from Algerian agricultural soils. South Asian J Exp Biol (2020). 10(6) : 413-426. DOI : 10.38150/sajeb.10(6) :413-426

Sakpuntoon V, Angchuan J, Boonmak C, Khunnamwong P, Jacques N, Grondin C, Casaregola S, Srisuk N. Savitreea pentosicarens gen. nov., sp. nov., a yeast species in the family Saccharomycetaceae isolated from a grease trap. Int J Syst Evol Microbiol. (2020). 70(11):5665-5670. DOI: 10.1099/ijsem.0.004457

Saubin M, Devillers H, Proust L, Brier C, Grondin C, Pradal M, Legras JL, Neuvéglise C. Investigation of Genetic Relationships Between Hanseniaspora Species Found in Grape Musts Revealed Interspecific Hybrids With Dynamic Genome Structures. Front. Microbiol.(2020). 10:2960. DOI : 10.3389/fmicb.2019.02960

Amoikon TLS, Marcotte S, N’Dede Djeni T, Celaire N’Sa KM, Grondin C, Tinsley C, Casaregola S, Dje MK. A study on the potential of yeasts isolated from palm wines to produce flavouring compounds. LWT - Food Science and Technology (2020). 128:109506. DOI:10.1016/j.lwt.2020.109506

2019

M Leyva-Salas, J Mounier, M-B Maillard, F.Valence, A. Thierry.  Identification and quantification of natural compounds produced by antifungal bioprotective cultures in dairy products. Food Chemistry 301 (2019). https://doi.org/10.1016/j.foodchem.2019.125260

R. Merabti , M-N. Madec  V.Chuat , F Becila , BR Boussekine , F Bekhouche and F ValenceFirst Insight into the Technological Features of Lactic Acid Bacteria Isolated from Algerian Fermented Wheat Lemzeiet. Current microbiology. Current Microbiology 76(10):1095-1104. (2019). https://doi.org/10.1007/s00284-019-01727-3

C Ponsart, M Riou, Y Locatelli , I Jacques, A Fadeau, M Jay, R Simon, L Perrot, L Freddi, S Breton, T Chaumeil, B Blanc, K Ortiz, C Vion, D Rioult, E Quéméré, P Sarradin, JY Chollet, B Garin-Bastuji, S Rossi. Brucella melitensis Rev.1 vaccination generates a higher shedding risk of the vaccine strain in Alpine ibex (Capra ibex) compared to the domestic goat (Capra hircus).  Veterinary Research Nov 27;50(1):100 (2019). doi: 10.1186/s13567-019-0717-0.

Ponsart, C., Garin-Bastuji, B., Riou, M., Locatelli, Y., Fadeau, A., Jaÿ, M., Jacques, I., Simon, R., Perrot, L., Breton, S., Chaumeil, T., Blanc, B., Ortiz, K., Rioult, D., Quemere, E., Sarradin, P., Chollet, J.Y., Rossi, S. (2018) (paru en 2019). Vaccination anti-brucellique du bouquetin des Alpes (Capra Ibex), une option pour l’assainissement du massif du Bargy ? Comparaison du niveau d’innocuité conjonctivale du vaccin Rev.1 chez le bouquetin des Alpes et la chèvre domestique (Capra hircus). Épidémiologie et Santé Animale, 74, 25-42.

F Kempf, E ChambellonE Helloin, H Garreau, F Lantier. Genome sequences of 17 Pasteurella multocida strains involved in cases of rabbit pasteurellosis. Microbiol Resour Announc. Sep 12;8(37) (2019). pii: e00681-19. doi: 10.1128/MRA.00681-19.

Garreau, H., Lantier, F., Guitton, E., Helies, V., Helloin, E., Le Cren, D., Lenoir, G., Maupin, M., Robert, R., Gunia, M. (2019). Relations entre la résistance à la pasteurellose après infection expérimentale et les caractères de croissance et de reproduction mesurés en élevage commercial. Cuniculture magazine, 46, 81-4.

Gunia, M., Lantier, F., Balmisse, E., Guitton, E., Helloin, E., Le Cren, D., Lenoir, G., Maupin, M., Robert, R., Riou, M., Garreau, H. (2019). Projet RELAPA (génomique pour la résistance génétique des lapins à la Pasteurellose) : statut hématologique de lapins sensibles et résistants. Cuniculture magazine, 46, 73-6.

Shrestha, M., Garreau, H., Balmisse, E., Bed’hom, B., David, I., Guitton, E., Helloin, E., Lenoir, G., Maupin, M., Robert, R., Lantier, F., Gunia, M. (2019). Projet RELAPA (génomique pour la Résistance génétique des lapins à la pasteurellose) : paramètres génétiques. Cuniculture magazine, 46, 77-80.

Filiatrault-Chastel C, Navarro D , Haon M , Grisel S, Herpoël-Gimbert I, Chevret D, Fanuel M, Henrissat B, Heiss-Blanquet S , Margeot A, Berrin JG. AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes Biotech for Biofuels. DOI:https://doi.org/10.1186/s13068-019-1394-y

G Paës; D Navarro; Y Benoit; S Blanquet; B Chabbert; B Chaussepied; PM Coutinho; S Durand; IV Grigoriev; M Haon; L Heux; C Launay; A Margeot; Y Nishiyama; S Raouche; M-N Rosso; E Bonnin; J-G Berrin. Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance. Biotechnology for Biofuels 12, 76 (2019) DOI: https://doi.org/10.1186/s13068-019-1417-8

Ansari M., Mohsen Taghavi S., ZareiS., Miri K., Portier P., Osdaghi E.  Pathogenicity and molecular-phylogenetic analysis revealed a distinct position of the banana finger-tip rot pathogen among the Burkholderia cenocepacia genomovars. Plant Pathology. (2019) 68:804–815. DOI: 10.1111/ppa.12976

Ferreira M, Bonneau S., Briand M., Cesbron S., Portier P., Darrasse A., Gama M.A.S., Barbosa M.A.G, Mariano R.dL.R., Souza E.B and Jacques M.A.  Xanthomonas citri pv. viticola AffectingGrapevine in Brazil: Emergence of a Successful Monomorphic Pathogen. Frontiers in Plant Science (2019). 10:489 https://doi.org/10.3389/fpls.2019.00489

Gonçalves R.M., Balbi-Peña M. I., SomanJ. M., Maringoni A. C., Taghouti G., Fischer-Le SauxM., Portier P. Genetic diversity of Curtobacterium flaccumfaciens revealed by multilocus sequence analysis. European Journal of Plant Pathology. (2019) 154 (2): 189-202. doi.org/10.1007/s10658-018-01648-0

Meline V., Delage W., Brin C., Li‐Marchetti C., Sochard D., Arlat M., Rousseau C., Darrasse A., Briand M., Lebreton G., Portier P., Fischer‐Le Saux M., Durand K., Jacques M‐A., Belin E., Boureau T. Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas. Molecular plant pathology. (2019) 20(1), 33–50. DOI: 10.1111/mpp.12737

Pédron J., Bertrand C., Taghouti G., Portier P., Barny M-A.  Pectobacterium aquaticum sp. nov, isolated from waterways. IJSEM (2019) 69:745-751. DOI 10.1099/ijsem.0.003229

Portier P., Pédron J.​, Taghouti G., Fischer-Le Saux M., Caullireau E.​, Bertrand C., Laurent A., Chawki K., Oulgazi S., Moumni M., Andrivon D., Dutrieux C, Faure D.​, Hélias V.​, Barny M-A. Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants. IJSEM (2019). 69:3214–3223. https://doi.org/10.1099/ijsem.0.003611

Timilsina S., S. Kara, M.-A. Jacques, N. Potnis, G.V. Minsavage, G.E. Vallad, J.B. Jones, M. Fischer-Le Saux. Reclassification of Xanthomonas gardneri (ex Šutic 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trebaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses. IJSEM (2019) 69:343–349. DOI 10.1099/ijsem.0.003104

Amoikon TLS, Aké MDF, Djéni NT, Grondin C, Casaregola S, Djè KM.  Diversity and enzymatic profiles of indigenous yeasts isolated from three types of palm wines produced in Côte d’Ivoire. J. Appl. Microbiol. (2019). 126:567–579. DOI: 10.1111/jam.14154

Jacques N, Casaregola S.Large biodiversity of yeasts in French Guiana and the description of Suhomyces coccinellae f.a. sp. nov. and Suhomyces faveliae f.a. sp. nov. Int J Syst Evol Microbiol. (2019). 69(6):1634-1649. DOI:  10.1099/ijsem.0.003369. Epub (2019) Apr 29.

Lopes MR, Santos ARO, Moreira JD, Santa-Brígida R, Martins MB, Pinto FO, Valente P, Morais PB, Jacques N, Grondin C, Casaregola S, Lachance MA, Rosa CA.Kurtzmaniella hittingeri f.a., sp. nov., isolated from rotting wood and fruits, and transfer of three Candida species to the genus Kurtzmaniella as new combinations. Int J Syst Evol Microbiol. (2019). 69(5):1504-1508. DOI: 10.1099/ijsem.0.003337. Epub (2019) Mar 11.

Tra Bi CY, Amoikon TLS, Kouakou CA, Noemie J, Lucas M, Grondin C, Legras JL, N'guessan FK, Djeni TN, Djè MK, Casaregola SGenetic diversity and population structure of Saccharomyces cerevisiae strains isolated from traditional alcoholic beverages of Côte d'Ivoire. Int J Food Microbiol. (2019). 297:1-10. DOI: 10.1016/j.ijfoodmicro.(2019).03.001

Urien C, Legrand J, Montalent P, Casaregola S, Sicard D. Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour. Front Microbiol. (2019). 10:201. DOI:  10.3389/fmicb.(2019).00201.

2018

L Garnier, J Mounier, S Lê, A Pawtowski, N Pinon, B Camier, M Chatel, G Garric, A Thierry, E Coton and F ValenceDevelopment of antifungal ingredients for dairy products: from in vitro screening to pilot scale application. Food microbiology (2018). https://doi.org/10.1016/j.fm.2018.11.003

L Garnier, ML Salas; N Pinon; N Wiernasz; A Pawtowski; E Coton; J Mounier; F Valence. Technical note: High-throughput method for antifungal activity screening in a cheese-mimicking model. Journal of Dairy Science 101, 4971–4976 (2018) DOI: 10.3168/jds.2017-13518

M Leyva-Salas, A Thierry, M Lemaitre, G Guarric, M Harel-Hoger, M Chatel, S Lê, J Mounier, F Valence, E. Coton (2018). Antifungal Activity of Lactic Acid Bacteria Combinations in Dairy Mimicking Models and Their Potential as Bioprotective Cultures in Pilot Scale Applications. Frontiers in microbiology, 9:1-18

M Coton , M Lebreton , M-L Salas , L Garniera, M Navarri , A Pawtowski , G  Le Blay , F Valence, E Coton , J Mounier. Biogenic amine and antibiotic resistance profiles determined for lactic acid bacteria and a propionibacterium prior to use as antifungal bioprotective cultures. Int. dairy Journal, 85,21-26. (2018). https://doi.org/10.1016/j.idairyj.2018.05.001

F Cousin, R Le Guellec, V Chuat, M Dalmasso, J–M Laplace. Multiplex PCR for rapid identification of major lactic acid bacteria genera in cider and other fermented foods. International Journal of Food Microbiology, Elsevier, 2019, 291, pp.17–24. ⟨10.1016/j.ijfoodmicro. (2018).11.004⟩. ⟨hal–01977627⟩

Tauzin, A.S., Bruel, L., Laville, E., Nicoletti, C., Navarro, D., Henrissat, B., Perrier, J., Potocki-Veronese, G., Giardina, T., Lafond, M., 2019. Sucrose 6F-phosphate phosphorylase: a novel insight in the humangut microbiome. Microb Genom. DOI: https://doi.org/10.1099/mgen.0.000253

F Valence, Y Le Loir. Bienvenue à la banque des bactéries alimentaires. The Conversation, The Conversation France, (2018), ⟨hal–01793725⟩

Y Le Loir, F Valence. Fromages : pourquoi les microbes sont les meilleurs alliés du goût. The Conversation France, (2018) ⟨hal–01724880⟩

G.Vergnaud, Y Hauck, D Christiany, B Daoud, C Pourcel, I Jacques, A. Cloeckaert, M Zygmunt. Genotypic expansion within the population structure of classical Brucella species revealed by MLVA16 typing of 1404 Brucella isolates from different animal and geographic origins, 1974-2006. Frontiers in Microbiology, 9, 1-11.(2018). DOI : 10.3389/fmicb.2018.01545

Amara S, Perrot T, Navarro D, Deroy A, Benkhelfallah A, Chalak A, Daou M, Chevret D, Faulds CB, Berrin J-G, Morel-Rouhier M, Gelhaye E and Record E. Enzyme activities of two recombinant heme-including peroxidases TvDyP1 and TvVP2 identified from the secretome of Trametes versicolor.  Appl Environ Microbio DOI: 10.1128/AEM.02826-17

López M.M.​, Lopez-Soriano P., Garita-Cambronero J.​, Beltrán C., Taghouti G.​, Portier P.​,  Cubero J.​, Fischer-Le Saux M.​, Marco-Noales E. Xanthomonas prunicola sp. nov., a novel pathogen that affects nectarine (Prunus persica var. nectarina) trees. Int J Syst Evol Microbiol (2018) 68:1857-1866. 10.1099/ijsem.0.002743

Lachance MA, Vale HMM, Sperandio EM, Carvalho AOS, Santos ARO, Grondin C, Jacques N, Casaregola S, Rosa CA. Wickerhamiella dianeseif.a., sp. nov. and Wickerhamiella kurtzmanii f.a., sp. nov., two yeast species isolated from plants and insects. Int J Syst Evol Microbiol. (2018). 68(10):3351-3355. DOI:  10.1099/ijsem.0.003000. 

Amoikon TLS, Grondin C, Djéni TN, Jacques N, Casaregola S. .Starmerella reginensis f.a., sp. nov. and Starmerella kourouensis f.a., sp. nov., isolated from flowers in French Guiana. Int J Syst Evol Microbiol. (2018). 68(7):2299-2305. DOI: 10.1099/ijsem.0.002829.

Into P, Pontes A, Jacques N, Casaregola S, Limtong S, Sampaio JP. Papiliotrema plantarum sp. nov., a novel tremellaceous sexual yeast species. Int J Syst Evol Microbiol. (2018). 68(6):1937-1941. DOI: 10.1099/ijsem.0.002771.

Quintilla R, Kolecka A, Casaregola S, Daniel HM, Houbraken J, Kostrzewa M, Boekhout T, Groenewald M.MALDI-TOF MS as a tool to identify foodborne yeasts and yeast-like fungi. Int J Food Microbiol. (2018). 266:109-118. DOI:  10.1016/j.ijfoodmicro.2017.11.016.